Journal Articles, Proceedings & Book Chapters
M. Gough, E. Graviss, T. Chen, E. Obasi, E. May. Compounding Effect of Vitamin D3 Diet, Supplementation, and Alcohol Exposure on Macrophage Response to Mycobacterium Infection. Tuberculosis (Edib). 2019. Accepted. In Press.
M. Latif, E. May. A Multiscale Agent-Based Model for Investigation of E. coli K12 Metabolic Response During Biofilm Formation. Bulletin of Math Biology. September 2018. https://rdcu.be/6Luq D. Stolley, E. May. Spatiotemporal Analysis of Mycobacterium-Dependent Macrophage Response. Proceedings of the IEEE Engineering in Medicine and Biology Society International Conference, 2018.
M. Gough, E. May. In silico Model of Vitamin D3 Dependent NADPH Oxicase Complex Activation During Mycobacterium Infection, Proceedings of the IEEE Engineering in Medicine and Biology Society International Conference, 2018.
M. Gough, E. Graviss, E. May. The Dynamic Immunomodulatory Effects of Vitamin D3 During Mycobacterium Infection. Innate Immun. June 2017.
E. May, J. Harper, S. Brozik. Computational Biosensors: Molecules, Algorithms, and Detection Platform, Modeling, Methodologies and Tools for Molecular and Nano-scale Communications. T.N. J Suzuki, MJ Moore, Editor. 2017, Springer.
E. May, C. Sershen. Oxygen Availability and Metabolic Dynamics During Mycobacterium tuberculosis Latency. IEEE Trans. Biomed Eng. 63:10, p2036-2046. Oct. 2016.
E. May, C. Sershen. Oxygen Availability and Metabolic Dynamics During Mycobacterium tuberculosis Latency. IEEE Trans. Biomed Eng. 63:10, p2036-2046. Oct. 2016.
T. Salim, C. Sershen, E. May, Investigating the Role of TNF-α and IFN-γ Activation on the Dynamics of iNOS Gene Expression in LPS Stimulated Macrophages. PLoS One. 2016.
Clancy CE, An G., Cannon, WR, Liu Y, May EE, Ortoleva P, Popel AS, Sluka JP, Su J, Vicini P, Zhou X, Eckmann DM. Multiscale Modeling in the Clinic: Drug Design and Development Ann Biomed Eng (2016) 44: 2591. doi:10.1007/s10439-016-1563-0
C. Sershen, S. Plimpton, E. May, Oxygen modulates the effectiveness of granuloma mediated host response to Mycobacterium tuberculosis: a multi-scale computational biological approach. Frontiers in Cellular and Infection Microbiology. 2016.
M. Gough, E. May. An In silico Model of the Effects of Vitamin D3 on Mycobacterium Infected Macrophage, Proceedings of the IEEE Engineering in Medicine and Biology Society International Conference, 2016.
T. Salim, E. May. In silico Kinetic Model of iNOS Expression in Macrophages, Proceedings of the IEEE Engineering in Medicine and Biology Society International Conference, 2014.
C. Sershen, S. Plimpton, E. May. A Method for Modeling Oxygen Diffusion in an Agent-based Model with Application to Host-Pathogen Infection, Proceedings of the IEEE Engineering in Medicine and Biology Society International Conference, 2014.
Clancy CE, An G., Cannon, WR, Liu Y, May EE, Ortoleva P, Popel AS, Sluka JP, Su J, Vicini P, Zhou X, Eckmann DM. Multiscale Modeling in the Clinic: Drug Design and Development Ann Biomed Eng (2016) 44: 2591. doi:10.1007/s10439-016-1563-0
C. Sershen, S. Plimpton, E. May, Oxygen modulates the effectiveness of granuloma mediated host response to Mycobacterium tuberculosis: a multi-scale computational biological approach. Frontiers in Cellular and Infection Microbiology. 2016.
M. Gough, E. May. An In silico Model of the Effects of Vitamin D3 on Mycobacterium Infected Macrophage, Proceedings of the IEEE Engineering in Medicine and Biology Society International Conference, 2016.
T. Salim, E. May. In silico Kinetic Model of iNOS Expression in Macrophages, Proceedings of the IEEE Engineering in Medicine and Biology Society International Conference, 2014.
C. Sershen, S. Plimpton, E. May. A Method for Modeling Oxygen Diffusion in an Agent-based Model with Application to Host-Pathogen Infection, Proceedings of the IEEE Engineering in Medicine and Biology Society International Conference, 2014.
E. May, A. Leitao, A. Tropsha, T. Oprea. A Systems chemical biology study of Malate Synthase and Isocitrate Lyase inhibition in Mycobacterium tuberculosis during active and NRP growth, Computational Biology and Chemistry, 47:167-180. September 2013.
S. Bennun, E. May. Modeling electron transfer and oxidative phosphorylation for the pathogenic bacteria Francisella tularensis, Proceedings of the IEEE Engineering in Medicine and Biology Society International Conference, 2012. Poster
T. Oprea, E. May, A. Leitao, A. Tropsha. Computational Systems Chemical Biology, Methods Mol Biol.; 672:459-88, 2011.
E. May, R. Schiek. BioXyce: An engineering platform for the study of cellular systems. IET Systems Biology Journal, 3(2):77-89, March 2009.
E. May, Dolan P, Crozier P, Brozik S., Manginell M., Towards de novo design of deoxyribozyme biosensors for GMO detection. IEEE Sensors Journal, 8(6):1011-1019. June 2008.
E. May, M. Lee, P. Dolan, P. Crozier, S. Brozik, M. Manginell. Computational sensing and in vitro classification of GMOs and biomolecular events. Proceedings of the 26th Army Science Conference. December 2008.
E. May, A. Leitao, J-L. Faulon, J. Joo, M. Misra, T. Oprea. Understanding virulence mechanisms in M. tuberculosis infection via a circuit-based simulation framework. Proceedings of the IEEE Engineering in Medicine and Biology Society International Conference, pp 4953-4955, August 2008.
E. May, M. Vouk, and D. Bitzer. An Error-Control Coding Model For Classification of Escherichia coli K-12 Ribosome Binding Sites. IEEE EMB Magazine, 25(1):90-7, January 2006.
S. Bennun, E. May. Modeling electron transfer and oxidative phosphorylation for the pathogenic bacteria Francisella tularensis, Proceedings of the IEEE Engineering in Medicine and Biology Society International Conference, 2012. Poster
T. Oprea, E. May, A. Leitao, A. Tropsha. Computational Systems Chemical Biology, Methods Mol Biol.; 672:459-88, 2011.
E. May, R. Schiek. BioXyce: An engineering platform for the study of cellular systems. IET Systems Biology Journal, 3(2):77-89, March 2009.
E. May, Dolan P, Crozier P, Brozik S., Manginell M., Towards de novo design of deoxyribozyme biosensors for GMO detection. IEEE Sensors Journal, 8(6):1011-1019. June 2008.
E. May, M. Lee, P. Dolan, P. Crozier, S. Brozik, M. Manginell. Computational sensing and in vitro classification of GMOs and biomolecular events. Proceedings of the 26th Army Science Conference. December 2008.
E. May, A. Leitao, J-L. Faulon, J. Joo, M. Misra, T. Oprea. Understanding virulence mechanisms in M. tuberculosis infection via a circuit-based simulation framework. Proceedings of the IEEE Engineering in Medicine and Biology Society International Conference, pp 4953-4955, August 2008.
E. May, M. Vouk, and D. Bitzer. An Error-Control Coding Model For Classification of Escherichia coli K-12 Ribosome Binding Sites. IEEE EMB Magazine, 25(1):90-7, January 2006.
M. Oishi, May E., Addressing biological circuit simulation accuracy: Reachability for parameter identification and initial conditions. Proceedings of the IEEE Biomedical Circuits and Systems Conference, 152-155, pp. 85-88, November 2006.
E. May, P. Dolan, P. Crozier, and S. Brozik. Syndrome-based discrimination of single nucleotide polymorphism. Proceedings of the IEEE Engineering in Medicine and Biology Society International Conference, 1:4548-51. August 2006.
E. May, R. Schiek. Simulating metabolism in Escherichia colii K-12 – a circuit-based approach. Proceedings of the IEEE Engineering in Medicine and Biology Society International Conference, 1:4548-51. August 2006.
E. May, M. Vouk, D. Bitzer, and D. Rosnick. Coding Theory Based Models for Protein Translation Initiation in Prokaryotic Organisms. BioSystems Journal, 76(1-3):249-60, 2004.
E. May, M. Vouk, D. Bitzer, and D. Rosnick. An Error-Correcting Code Framework for Genetic Sequence Analysis, Journal of the Franklin Institute, 341(1-2):89-109, 2004.
E. May. Towards a Biological Coding Theory Discipline, New Thesis. February 2004.
E. May, P. Dolan, P. Crozier, and S. Brozik. Syndrome-based discrimination of single nucleotide polymorphism. Proceedings of the IEEE Engineering in Medicine and Biology Society International Conference, 1:4548-51. August 2006.
E. May, R. Schiek. Simulating metabolism in Escherichia colii K-12 – a circuit-based approach. Proceedings of the IEEE Engineering in Medicine and Biology Society International Conference, 1:4548-51. August 2006.
E. May, M. Vouk, D. Bitzer, and D. Rosnick. Coding Theory Based Models for Protein Translation Initiation in Prokaryotic Organisms. BioSystems Journal, 76(1-3):249-60, 2004.
E. May, M. Vouk, D. Bitzer, and D. Rosnick. An Error-Correcting Code Framework for Genetic Sequence Analysis, Journal of the Franklin Institute, 341(1-2):89-109, 2004.
E. May. Towards a Biological Coding Theory Discipline, New Thesis. February 2004.
R. Schiek and E. May, Using large scale, multi-cellular pathway modeling to understand cellular differentiation, Proceedings of the American Institute of Chemical Engineering Annual Meeting, November 2004.
S. Martin, G. Davidson, E. May, M. Werner-Washburn, J. L. Faulon Inferring Genetic Networks from Microarray Data. International Conference on Systems Biology. 2004.
D. Schmidt and E. May. Visualizing ECC Properties of E. coli K-12 Translation Initiation Sites. Proceedings of the 2nd IEEE Workshop on Genomic Signal Processing and Statistics (GENSIPS). May 2004.
E. May and R. Schiek, Simulating Regulatory Networks Using XyceTM. Proceedings of the Fourth International Conference on Systems Biology, November 2003.
XH Wang, RSH Istepanian, YH Song, EE May, Review of application of coding theory in genetic sequence analysis. Healthcom 2003 Proceedings, pp. 5-9, June 2003.
R. Schiek and E. May, Development of a Massively-Parallel, Biological Circuit Simulator, Proceedings of the IEEE Computational Systems Bioinformatics 2003 Conference, pp.620—622 (2003).
E. May, M. Vouk, D. Bitzer, and D. Rosnick. Binding Motif Based Code Models for Prokaryotic Translation Initiation. Proceedings of the 4th Annual IEEE EMBS Special Topic Conference on Information Technology Applications in Biomedicine, pp. 5-8, April 2003
E. May. Optimal Generators for a Systematic Block Code Model of Prokaryotic Translation Initiation. Proceedings of the 25th Silver Anniversary International Conference of the IEEE Engineering in Medicine and Biology Society, September 2003
D. Rosnick, D. Bitzer, M. Vouk, and E. May. Escherichia coli Protein Coding Sequence Detection. Proceedings of the 1st Workshop on Genomic Signal Processing and Statistics (GENSIPS), October 2002
E. May, M. Vouk, D. Bitzer, and D. Rosnick. A Coding Theory Framework for Genetic Sequence Analysis. Proceedings of the 1st Workshop on Genomic Signal Processing and Statistics (GENSIPS), October 2002
E. May, M. Vouk, D. Bitzer, and D. Rosnick. Constructing Optimal Convolutional Code Models for Prokaryotic Translation Initiation. Proceedings of the 2nd Joint Meeting of the IEEE EMBS and BMES, October 2002
E. May, M. Vouk, D. Bitzer, and D. Rosnick. The Ribosome as a Table-Driven Convolutional Decoder for the Escherichia coli K-12 Translation Initiation System. World Congress on Medical Physics and Biomedical Engineering Conference, July 2000.
D. Rosnick, D. Bitzer, M. Vouk, and E. May. Free Energy Periodicity in E.coli Codings. World Congress on Medical Physics and Biomedical Engineering Conference, July 2000.
E. May, M. Vouk, D. Bitzer, and D. Rosnick. Coding Model for Translation in E. coli K-12. First Joint Conference of EMBS-BMES. Atlanta, GA, October 1999. (Region 3 Student Finalist)
D. Rosnick, D. Bitzer, M. Vouk, and E. May. Free Energy Periodicity in E.coli. First Joint Conference of EMBS-BMES. Atlanta, GA, October 1999.
Proceedings (Invited, non-comprehensive)
E. May. The Emergence of Biological Coding Theory as a Mathematical Framework for Modeling, Monitoring, and Modulating Biomolecular Systems. Proceedings of the 43rd Annual Conference on Information Sciences and Systems, Johns Hopkins University, March 2009, Invited.
TD Schneider, H Yockey, DA MacDonaill, EE May, C Rose, JS Garavelli, A Andreou, AW Eckford. Coding theory and channel capacity in biology: Grand research challenges. NSF Workshop on Molecular Communication/Biological Communications Technology. Feb. 2008.
May E.. Bits and bases, parallel paradigms for communication. Conference Record of the 41st Asilomar Conference on Signals, Systems, and Computers, pp 165-169, November 2007. Invited.
S. Martin, G. Davidson, E. May, M. Werner-Washburn, J. L. Faulon Inferring Genetic Networks from Microarray Data. International Conference on Systems Biology. 2004.
D. Schmidt and E. May. Visualizing ECC Properties of E. coli K-12 Translation Initiation Sites. Proceedings of the 2nd IEEE Workshop on Genomic Signal Processing and Statistics (GENSIPS). May 2004.
E. May and R. Schiek, Simulating Regulatory Networks Using XyceTM. Proceedings of the Fourth International Conference on Systems Biology, November 2003.
XH Wang, RSH Istepanian, YH Song, EE May, Review of application of coding theory in genetic sequence analysis. Healthcom 2003 Proceedings, pp. 5-9, June 2003.
R. Schiek and E. May, Development of a Massively-Parallel, Biological Circuit Simulator, Proceedings of the IEEE Computational Systems Bioinformatics 2003 Conference, pp.620—622 (2003).
E. May, M. Vouk, D. Bitzer, and D. Rosnick. Binding Motif Based Code Models for Prokaryotic Translation Initiation. Proceedings of the 4th Annual IEEE EMBS Special Topic Conference on Information Technology Applications in Biomedicine, pp. 5-8, April 2003
E. May. Optimal Generators for a Systematic Block Code Model of Prokaryotic Translation Initiation. Proceedings of the 25th Silver Anniversary International Conference of the IEEE Engineering in Medicine and Biology Society, September 2003
D. Rosnick, D. Bitzer, M. Vouk, and E. May. Escherichia coli Protein Coding Sequence Detection. Proceedings of the 1st Workshop on Genomic Signal Processing and Statistics (GENSIPS), October 2002
E. May, M. Vouk, D. Bitzer, and D. Rosnick. A Coding Theory Framework for Genetic Sequence Analysis. Proceedings of the 1st Workshop on Genomic Signal Processing and Statistics (GENSIPS), October 2002
E. May, M. Vouk, D. Bitzer, and D. Rosnick. Constructing Optimal Convolutional Code Models for Prokaryotic Translation Initiation. Proceedings of the 2nd Joint Meeting of the IEEE EMBS and BMES, October 2002
E. May, M. Vouk, D. Bitzer, and D. Rosnick. The Ribosome as a Table-Driven Convolutional Decoder for the Escherichia coli K-12 Translation Initiation System. World Congress on Medical Physics and Biomedical Engineering Conference, July 2000.
D. Rosnick, D. Bitzer, M. Vouk, and E. May. Free Energy Periodicity in E.coli Codings. World Congress on Medical Physics and Biomedical Engineering Conference, July 2000.
E. May, M. Vouk, D. Bitzer, and D. Rosnick. Coding Model for Translation in E. coli K-12. First Joint Conference of EMBS-BMES. Atlanta, GA, October 1999. (Region 3 Student Finalist)
D. Rosnick, D. Bitzer, M. Vouk, and E. May. Free Energy Periodicity in E.coli. First Joint Conference of EMBS-BMES. Atlanta, GA, October 1999.
Proceedings (Invited, non-comprehensive)
E. May. The Emergence of Biological Coding Theory as a Mathematical Framework for Modeling, Monitoring, and Modulating Biomolecular Systems. Proceedings of the 43rd Annual Conference on Information Sciences and Systems, Johns Hopkins University, March 2009, Invited.
TD Schneider, H Yockey, DA MacDonaill, EE May, C Rose, JS Garavelli, A Andreou, AW Eckford. Coding theory and channel capacity in biology: Grand research challenges. NSF Workshop on Molecular Communication/Biological Communications Technology. Feb. 2008.
May E.. Bits and bases, parallel paradigms for communication. Conference Record of the 41st Asilomar Conference on Signals, Systems, and Computers, pp 165-169, November 2007. Invited.